МикроРНК и гены, связанные с инфарктом миокарда
Ключевые слова:
miRNA, mRNA, сайты связывания, гены-мишени, инфаркт миокарда.Аннотация
При анализе взаимодействия 2564 miRNA с mRNA 185 генов, участвующих в развитии инфаркта миокарда человека, найдены 304 сайта связывания miRNA в 5'-UTR, CDS и 3'-UTR mRNA этих генов. Для 54 miRNA, участвующих в развитии инфаркта миокарда человека, из mRNA 17510 генов выявлено 17 генов-мишеней. Выявлены ассоциации miRNA и генов мишеней, характеристики которых позволяют использовать их в качестве диагностических маркеров при инфаркте миокарда. Для диагностики предпочтительно использовать ассоциации одной miRNA с mRNA нескольких генов, либо нескольких miRNA с mRNA одного гена. Рекомендованы ассоциации miRNA и mRNA генов мишеней с высокой свободной энергией взаимодействия miRNA с mRNA: miR-3960, miR-466, miR-574-5p вместе с парами их генов мишеней - PDE4D и SCAP, GSN и TNFSF4, CD40LG и OLR1, соответственно. Для диагностики предложены miRNA и mRNA генов мишеней с высокой величиной свободной энергии взаимодействия в сайтах связывания: miR-1273d, miR-4758-5p и miR-4763-5p связывающиеся с mRNA генов PPIA, NFKB1 и SH2B1, соответственно. miR-1226-5p с mRNA гена ALDH2, miR-1183 с mRNA гена THBS1, и miR-6089-5p с mRNA генов ADAM8, IL6R и TFAM.
Библиографические ссылки
1 American Heart Association. Heart and Stroke Statistical Update. - National Center. - 2012.- 43 р.
2 Abd El-Aziz T.A., Rezk N.A. Relation of PAI-1 and TPA genes polymorphisms to acute myocardial infarction and its outcomes in Egyptian patients // Cell Biochemistry & Biophysics.- 2015.- V.71(1).- P.227-234.
3 Шевченко А.В., Коненков В.И., Прокофьев В.Ф., Покушалов Е.А. Анализ комбинаций генотипов по полиморфным точкам промоторных участков трех матричных металлопротеиназ и гена эндотелия сосудов у больного с историей острого инфаркта миокарда // Терапевтический архив.- 2014.- №.86(4).- С.19-24.
4 Xu X., Wang L.H., Liu H.B. Association of chemokines and their receptors genes polymorphisms with risk of myocardial infarction // Zhonghua Yi Xue Yi Chuan Xue Za Zhi.- 2013.- V.30(5).- P.601-607.
5 Helseth R., Seljeflot I., Opstad T. Genes expressed in coronary thrombi are associated with ischemic time in patients with acute myocardial infarction // Thromb Research.- 2015.- №135(2).- P.329-333.
6 Kovacs V., Gasz B., Balatonyi B. Polymorphisms in glutathione S-transferase are risk factors for perioperative acute myocardial infarction after cardiac surgery: a preliminary study // Molecular & Cell Biochemistry.- 2014.- V.389(1-2).- P.79-84.
7 Sakowicz A., Fendler W., Lelonek M., Sakowicz B., Pietrucha T. Genetic polymorphisms and the risk of myocardial infarction in patients under 45 years of age // Biochemical Genetics.- 2013.- V.51(3-4).- P.230-242.
8 Wang Y., Wang L., Liu X., Zhang Y. Genetic variants associated with myocardial infarction and the risk factors in Chinese population // Public Library of Science One.- 2014.- V.9(1).- P.863.
9 Zhang T., Zhao L.L., Zhang Z.R., Fu P.D., Su Z.D., Qi L.C., Li X.Q., Dong Y.M. Interaction network analysis revealed biomarkers in myocardial infarction // Molecular Biology Report.- 2014.- V.41(8).- P.4997-5003.
10 Liu Q., Du G.Q., Zhu Z.T. Identification of apoptosis-related microRNAs and their target genes in myocardial infarction post-transplantation with skeletal myoblasts // Journal of Translational Medicine.- 2015.- V.19.- P.13-27.
11 Wang N., Zhou Z., Liao X., Zhang T. Role of microRNAs in cardiac hypertrophy and heart failure // International Union of Biochemistry and Molecular Biology (IUBMB) Life.- 2009.- V.61(6).- P.566-571.
12 Ye Y., Perez-Polo J.R., Qian J., Birnbaum Y. The role of microRNA in modulating myocardial ischemia-reperfusion injury // Physiological Genomics.- 2011.- V.43(10).- P.534-542.
13 Ono K., Kuwabara Y., Han J. MicroRNAs and cardiovascular diseases // Federation of European Biochemical Societies Journal.- 2011.- V.278(10).- P.1619-1633.
14 Xiao H., Lis J.T. Germline transformation used to define key features of heat-shock response elements // Science.- 1988.- V.239.- P.1139–1142.
15 Benjamin I.J., McMillan D.R. Stress (heat shock) proteins: molecular chaperones in cardiovascular biology and disease // Circulation research.- 1988.- V.83(2).- P.117–132.
16 Li S.P., Liu B., Song B., Wang C.X., Zhou Y.C. MiR-28 promotes cardiac ischemia by targeting mitochondrial aldehyde dehydrogenase 2 (ALDH2) in Mus musculus cardiac myocytes // European Review for Medical and Pharmacological Sciences.- 2015.- V.19.- P.752–758.
17 Rouzier C., Vanatka R., Bannwarth S. A novel homozygous MMP2 mutation in a family with Winchester syndrome // Clinical Genetics.- 2016.- V.69(3).- P.271–276.
18 Joladarashi D., Srikanth G.V., Thandavarayan R.A., Verma S.K., Mackie A.R., Khan M. Enhanced cardiac regenerative ability of stem cells after ischemia-reperfusion injury: role of human CD34(þ) cells deficient in MicroRNA-377 // Journal of the American College of Cardiology.- 2015.- V.66.- P.2214–2226.
19 Аулик И.В. Определение физической работоспособности в клинике и спорте // Медицина.- 1979.- С.192.
20 Read A.P., Strachan T. Human molecular genetics 2. - New York: Wiley.- 1999.- 576 р.
21 Sinnaeve P.R., Donahue M.P., Grass P., Seo D., Vonderscher J., Chibout S.D., Kraus W.E., Sketch M.J., Nelson C., Ginsburg G.S. Gene expression patterns in peripheral blood correlate with the extent of coronary artery disease // Public Library of Science One.- 2009.- V.4.- P.70-73.
22 Sondermeijer B.M., Bakker A., Halliani A., de Ronde M.W., Marquart A.A., Tijsen A.J., Mulders T.A., Kok M.G., Battjes S., Maiwald S. Platelets in patients with premature coronary artery disease exhibit upregulation of miRNA340-3p and miRNA624-5p // Public Library of Science One.- 2011.- V.6.- P.46-59.
23 Patterson T.A., Lobenhofer E.K., Fulmer-Smentek S.B., Collins P.J., Chu T.M., Bao W., Fang H., Kawasaki E.S., Hager J., Tikhonova I.R. Performance comparison of one-color and two-color platforms within the MicroArray Quality Control (MAQC) project // Natural Biotechnology.- 2016.- V.24.- P.1140–1150.
24 Иващенко А.Т., Атамбаева С., Ниязова Р.Е., Пинский И. Гены связанные с развитием инфаркта миокарда // Вестник КазНУ, биологическая серия.- 2015.- №3(65).- С.124-132.
25 Ivashchenko A., Berillo O., Pyrkova A., Niyazova R. Binding Sites of miR-1273 Family on the mRNA of Target Genes // Biomed Research International.- 2014.- V.2014.- P.1-11.
26 Ivashchenko A., Berillo O., Pyrkova A., Niyazova R., Atambayeva S. The properties of binding sites of miR-619-5p, miR-5095, miR-5096 and miR-5585-3p in the mRNAs of human genes // Biomed Research International.- 2014.- V.2014.- P.1-8.
27 Ivashchenko A., Berillo O., Pyrkova A., Niyazova R., Atambayeva S. MiR-3960 binding sites with mRNA of human genes // Bioinformation.- 2014.- V.10(7).- P.423-427.
28 Ivashchenko A., Berillo O., Pyrkova A., Niyazova R., Atambayeva S. The binding sites of unique miRNAs in the human mRNAs // Journal of Biotechnology.- 2014.- V.185S.- P.S37–S125.
29 Атамбаева С., Ниязова Р.Е., Берилло О., Иващенко А.Т. Особенности сайтов связывания mir-574-5р и mir-574-3р с mrna генов-мишеней // Вестник КазНУ, биологическая серия.- 2015.- №1(63).- С.349-354.
30 Niyazova R., Berillo O., Atambayeva S., Pyrkova A., Alybaeva A., Ivashchenko A. miR-1322 Binding Sites in Paralogous and Orthologous Genes // Biomed Research International.- 2015.- V.2015.- p.1-7.
31 Niyazova R., Atambayeva S., Akimniyazova A., Pinsky I., Alybaeva A., Faye B., Ivashchenko A.T. Features of mir-466-3p binding sites in mRNA genes with different functions // International Journal of Biology and Chemistry.- 2015.- V.8(2).- P.44- 51
References
1 American Heart Association (2012) Heart and Stroke Statistical Update, National Center, 43 P. DOI: 10.1161/CIR.0b013e31823ac046
2 Abd El-Aziz TA, Rezk NA (2015) Relation of PAI-1 and TPA genes polymorphisms to acute myocardial infarction and its outcomes in Egyptian patients, Cell Biochemistry & Biophysics, 71(1):227-234. DOI: 10.1007/s12013-014-0188-x
3 Shevchenko AV, Konenkov VI, Prokof'ev VF, Pokushalov EA (2014) Analysis of genotype combinations at the polymorphic points of the promoter regions of the genes of three matrix metalloproteinases and the gene of vascular endothelial growth factor (VEGF) in patients with history of acute myocardial infarction. Therapeutic archives [Analiz kombinacii genotipov po polimorfnym tochkam promotornyh uchastkov treh matrichnyh metalloproteinaz i gena faktora endoteliya sosudov u bolnogo s istoriei ostrogo infarkta miokarda, Terapevticheskii Arkhiv] 86(4):19-24. (In Russian)
4 Xu X, Wang LH, Liu HB (2013) Association of chemokines and their receptors genes polymorphisms with risk of myocardial infarction, Zhonghua Yi Xue Yi Chuan Xue Za Zhi, 30(5):601-607. DOI: 10.3760/cma.j.issn.1003-9406.2013.05.021
5 Helseth R, Seljeflot I, Opstad T (2015) Genes expressed in coronary thrombi are associated with ischemic time in patients with acute myocardial infarction, Thromb Research, 135(2):329-333. DOI: 10.1016/j.thromres.2014.11.028
6 Kovacs V, Gasz B, Balatonyi B (2014) Polymorphisms in glutathione S-transferase are risk factors for perioperative acute myocardial infarction after cardiac surgery: a preliminary study, Molecular & Cell Biochemistry, 389(1-2):79-84. DOI: 10.1007/s11010-013-1929-7
7 Sakowicz A, Fendler W, Lelonek M, Sakowicz B, Pietrucha T (2013) Genetic polymorphisms and the risk of myocardial infarction in patients under 45 years of age, Biochemical Genetics, 51(3-4):230-242. DOI: 10.1007/s10528-012-9558-5
8 Wang Y, Wang L, Liu X, Zhang Y (2014) Genetic variants associated with myocardial infarction and the risk factors in Chinese population, Public Library of Science One, 9(1):863. DOI: 10.1371/journal.pone.0086332
9 Zhang T, Zhao LL, Zhang ZR, Fu PD, Su ZD, Qi LC, Li XQ, Dong YM (2014) Interaction network analysis revealed biomarkers in myocardial infarction, Molecular Biology Report, 41(8):4997-5003. DOI: 10.1007/s11033-014-3366-4
10 Liu Q., Du G. Q., Zhu Z. T. Identification of apoptosis-related microRNAs and their target genes in myocardial infarction post-transplantation with skeletal myoblasts // Journal of Translational Medicine. – 2015. – V. 19. – P. 13-27.
11 Wang N, Zhou Z, Liao X, Zhang T (2009) Role of microRNAs in cardiac hypertrophy and heart failure, International Union of Biochemistry and Molecular Biology (IUBMB) Life, 61(6):566-571. DOI: 10.1002/iub.204
12 Ye Y, Perez-Polo JR, Qian J, Birnbaum Y (2011) The role of microRNA in modulating myocardial ischemia-reperfusion injury, Physiological Genomics, 43(10):534-542. DOI: 10.1152/physiolgenomics.00130.2010
13 Ono K, Kuwabara Y, Han J (2011) MicroRNAs and cardiovascular diseases, Federation of European Biochemical Societies Journal, 278(10):1619-1633. DOI: 10.1111/j.1742-4658.2011.08090.x
14 Xiao H, Lis JT (1988) Germline transformation used to define key features of heat-shock response elements, Science, 239:1139–1142. DOI: 10.1126/science.3125608
15 Benjamin IJ, McMillan DR (1988) Stress (heat shock) proteins: molecular chaperones in cardiovascular biology and disease, Circulation research, 83(2):117–132. DOI: 10.1161/01.RES.83.2.117
16 Li SP, Liu B, Song B, Wang CX, Zhou YC (2015) miR-28 promotes cardiac ischemia by targeting mitochondrial aldehyde dehydrogenase 2 (ALDH2) in Mus musculus cardiac myocytes, European Review for Medical and Pharmacological Sciences, 19:752–758.
17 Rouzier C, Vanatka R, Bannwarth S (2016) A novel homozygous MMP2 mutation in a family with Winchester syndrome, Clinical Genetics, 69(3):271–276. DOI: 10.1111/j.1399-0004.2006.00584.x
18 Joladarashi D, Srikanth GVN, Thandavarayan RA, Verma SK, Mackie AR, Khan M (2015) Enhanced cardiac regenerative ability of stem cells after ischemia-reperfusion injury: role of human CD34(þ) cells deficient in MicroRNA-377, Journal of the American College of Cardiology, 66:2214–2226. DOI: 10.1016/j.jacc.2015.09.009
19 Aulik IV (1979) The determination of physical working capacity in clinic and sport. Medicine [Opredelenie fizicheskoi rabotosposobnosti v klinike I sporte. Medicina] 192. (In Russian)
20 Read AP, Strachan T (1999) Human molecular genetics 2, New York:Wiley, 576 P.
21 Sinnaeve PR, Donahue MP, Grass P, Seo D, Vonderscher J, Chibout SD, Kraus WE, Sketch MJ, Nelson C, Ginsburg GS (2009) Gene expression patterns in peripheral blood correlate with the extent of coronary artery disease, Public Library of Science One, 4:70-73. DOI: ΔG/ΔGm 10.1371/journal.pone.0007037
22 Sondermeijer BM, Bakker A, Halliani A, de Ronde MW, Marquart AA, Tijsen AJ, Mulders TA, Kok MG, Battjes S, Maiwald S (2011) Platelets in patients with premature coronary artery disease exhibit upregulation of miRNA340-3p and miRNA624-5p, Public Library of Science One. 6:46-59. DOI: 10.1371/journal.pone.0025946
23 Patterson TA, Lobenhofer EK, Fulmer-Smentek SB, Collins PJ, Chu TM, Bao W, Fang H, Kawasaki ES, Hager J, Tikhonova IR (2016) Performance comparison of one-color and two-color platforms within the MicroArray Quality Control (MAQC) project, Natural Biotechnology, 24:1140–1150. DOI:10.1038/nbt1242
24 Ivashchenko A, Atambayeva S, Niyazova R, Pinsky I (2015) Genes associated with development of myocardial infarction. Vestnik KazNU, biological series [Geny svyazannye s razvitiem infarcta miocarda. Vestnik KazNU, biologicheskaya seriya] 3 (65):124-132. (In Russian)
25 Ivashchenko A, Berillo O, Pyrkova A, Niyazova R (2014) Binding Sites of miR-1273 Family on the mRNA of Target Genes, Biomed Research International, 2014: 1-11. DOI:10.1155/2014/620530
26 Ivashchenko A, Berillo O, Pyrkova A, Niyazova R, Atambayeva S (2014) The properties of binding sites of miR-619-5p, miR-5095, miR-5096 and miR-5585-3p in the mRNAs of human genes, Biomed Research International, 2014:1-8. DOI:10.1155/2014/720715
27 Ivashchenko A, Berillo O, Pyrkova A, Niyazova R, Atambayeva S (2014) MiR-3960 binding sites with mRNA of human genes, Bioinformation, 10(7):423-427. DOI:10.6026/97320630010423
28 Ivashchenko A, Berillo O, Pyrkova A, Niyazova R, Atambayeva S (2014) The binding sites of unique miRNAs in the human mRNAs, Journal of Biotechnology, 185S:S37–S125.
29 Atambayeva S, Niyazova R, Berillo O, Ivashchenko A (2015) Futures of miR-574-5р and miR-574-3р binding sites with mRNA of target genes. Vestnik KazNU, biological series [Osobennosti saitov svyazyvaniya miR-574-5р i miR-574-3р s mRNA genov-misheney. Vestnik KazNU, biologicheskaya seriya] 1 (63):349-354. (In Russian)
30 Niyazova R, Berillo O, Atambayeva S, Pyrkova A, Alybaeva A, Ivashchenko A (2015) miR-1322 Binding Sites in Paralogous and Orthologous Genes, Biomed Research International, 2015:1-7. DOI:10.1155/2015/962637
31 Niyazova R, Atambayeva S, Akimniyazova A, Pinsky I, Alybaeva A, Faye B, Ivashchenko AT (2015) Features of mir-466-3p binding sites in mRNA genes with different functions, International Journal of Biology and Chemistry, 8 (2):44- 51.