Interaction of miRNAs with mRNAs of MYB transcription factors gene family in Arabidopsis
127 52
Keywords:
miRNA, mRNA, MYB, binding site, arabidopsis.Abstract
The binding sites for 40 miRNAs in mRNAs of MYB gene family in Arabidopsis were identified. miR828 and miR858 target 14 and 13 genes respectively. 16 and 20 MYB family genes were targets for miR5021 and miR5658 respectively. Multiple binding sites with starts located sequentially in 1-3 nucleotides in mRNAs of miR5021 and miR5658 targets were revealed. miR159 and miR319 families had common binding sites in six MYB mRNAs. 26 miRNAs had one binding site in the mRNAs of 23 MYB genes. All miRNA binding sites were located in the protein coding sequence of target mRNAs. The nucleotide sequence of each miRNA binding site were homologous and encoded homologous oligopeptides.References
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2 Riano-Pachon D.M., Ruzicic S., Dreyer I. and Mueller-Roeber B. PlnTFDB: an integrative plant transcription factor database // BMC Bioinformatics. 2007. – Vol. 8. – P. 42.
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4 Zhang Y., Liang W., Shi J., Xu J., Zhang D. MYB56 Encoding a R2R3 MYB Transcription Factor Regulates Seed Size in Arabidopsis thaliana // Journal of Integrative Plant Biology. – 2013. – Vol. 55. – P. 1166-1178.
5 Li Y., Sawada Y., Hirai A., Sato M., Kuwahara A., Yan X., Hirai M.Y. Novel insights into the function of Arabidopsis R2R3- MYB transcription factors regulating aliphatic glucosinolate biosynthesis // Plant Cell Physiol. – 2013. – Vol. 54. – P. 1335-1344.
6 Liu S., Wang X., Li E., Douglas C.J., Chen J., Wang S. R2R3 MYB transcription factor PtrMYB192 regulates flowering time in Arabidopsis by activating FLOWERING LOCUS C // Journal of Plant Biology. – 2013. – Vol. 56. – P. 243-250.
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8 Seo P.J., Park C.M. MYB96-mediated abscisic acid signals induce pathogen resistance response by promoting salicylic acid biosynthesis in Arabidopsis // New Phytol. – 2010. – Vol. 186. – P. 471–483
9 Xia R., Zhu H., An Y.-G., Beers E.P., Liu Z. Apple miRNAs and tasiRNAs with novel regulatory networks // Genome Biol. – 2012. – Vol.13. – P. 47.
10 Zhou M., Luo H. MicroRNA-mediated gene regulation: potential applications for plant genetic engineering // Plant Mol Biol. – 2013. – Vol. 83. – P. 59-75.
11 Fu C., Sunkar R., Zhou C., Shen H., Zhang J-Y., Matts J., Wolf J., Mann D.G.J., Stewart C.N., Tang Y., Wang Z.Y. Overexpression of miR156 in switchgrass (Panicum virgatum L.) results in various morphological alterations and leads to improved biomass production
// Plant Biotechnol. J. – 2012. – Vol. 10. – P. 443–452.
12 Schommer C., Bresso E., Spinelli S.V., Palatnik J.F. MicroRNAs in Plant Development and Stress Responses. – Signaling and Communication in Plants 15. – H.: Springer, 2012. – 296 p.
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15 Bari A.A., Orazova S.B., Ivashchenko A.T. miR156- and miR171-Binding Sites in the Protein-Coding Sequence of Some Plant Genes // BioMed Res. Int. – 2013. – Vol. 2013. – P. 1-7.
16 Сагайдак А.И., Пинский И.В., Иващенко А.Т., Ренье М., Бари А.А. Связывание miRNA с mRNA генов рост-регулирующих транскрипционных факторов арабидопсиса, риса и кукурузы // Вестник. Серия биологическая. – 2013. – Т.3, №59. – С. 289-292.
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Bari А. А., Ivashchenko, I. T., Pinsky, I. V., Sagaidak, A. I., & Orazova, S. B. (2015). Interaction of miRNAs with mRNAs of MYB transcription factors gene family in Arabidopsis. Experimental Biology, 60(1), 18–22. Retrieved from https://bb.kaznu.kz/index.php/biology/article/view/47
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Bioinformatics, Genomics and Proteomics. Physical-chemical Biology
