MOLECULAR GENETIC IDENTIFICATION OF BACTERIA ISOLATED FROM GOAT MILK

Authors

  • S.A. Nadirova Almaty Technological University, Kazakhstan, Almaty
  • Yu.A. Sinyavskiy Kazakh Academy of Nutrition, Kazakhstan, Алматы
  • R.S. Utegalieva Kazakh National Women's Pedagogical University, Kazakhstan, Almaty
  • E.Zh. Gabdullina Almaty Technological University, Kazakhstan, Almaty
  • S.N. Abdreshov Republican State enterprise on the Right of economic management "Institute of genetics and physiology" of the Committee of science of the MES RK, Kazakhstan, Almaty

DOI:

https://doi.org/10.26577/eb.2023.v94.i1.09

Abstract

In recent years there has been a steady trend towards an increase in the number of studies on the study of probiotics, which have a beneficial effect on the body: improve the intestinal microflora; contribute to the reduction of pathogenic bacteria; have the ability to produce substances with antimicrobial activity. In order to obtain probiotics from domestic raw materials, molecular genetic identification of bacterial strains was carried out. The object for the isolation of lactic acid bacteria was natural goat milk from the Almaty region, IE "Bekezhanova". Identification of bacterial strains was carried out on an ABI 3500 xL genetic analyzer (Applied Biosystems) using 16S primers 8F and 806R at the Scientific and Practical Center for Microbiology and Virology (Almaty). Phylogenetic analysis was performed using MEGA 6 software. Nucleotide sequence alignment was performed using the ClustalW algorithm. The results were obtained using the method of determining the direct nucleotide sequence of the 16S rRNA gene fragment, followed by comparison of the nucleotide identity with the sequences deposited in the international GenBank database. According to the results of the studies, the isolated strains of lactic acid bacteria according to the GenBank database were assigned to Lactobacillus fermentum (identity above 99.73%). These strains of microorganisms isolated from goat's milk may be promising for the production of domestic food products. On their basis it is proposed to create fermented milk products for preventive purposes.

References

Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: A New Gen- eration of Protein Database Search Programs. Nucleic Acids Research, 1997. Vol. 25, No. P. 3389-3402. htpp://www.ncbi. nlm. nih.gov.

Altschul, S.F., et al. Gapped BLAST and PSI-BLAST: A New Generation of Protein Database Search Programs. Nucleic Acids Research, 1997. Vol. 25, No. P. 3389-3402.

Bernhom N., Licht T.R., Brogren C.H. et al. Effects of Lactococcus lactis on Composition of Intestinal Microbiota: Role of Nisin // Applied and Environmental Microbiology. 2006. Vol. 72. Р. 1239–1244.

Broberg A., Jacobsson K., Ström K., Schnürer J. Metabolite Profiles of Lactic Acid Bacteria in Grass Silage // Applied and Environmental Microbiology. 2007. Vol. 73. P. 5547–5552.

Cocolin L., Dolci P., Rantsiou K., Urso R., Cantoni C., Comi G. Lactic acid bacteria ecology of three traditional fermented sausages produced in the North of Italy as determined by molecular methods. Meat Sci. 2009;82:125–132. doi: 10.1016/j.meat- sci.2009.01.004.

Daba Н., Saidi S. Detection of bacteriocin-producing lactic acid bacteria from milk in various farms in north-east Algeria by a new procedure // Agronomy Research. 2015. Vol. 13. No. 4. P. 907–918.

De Man J. C., Rogosa M., Sharpe M. E.1960 Medium for the cultivation of lactobacilli. J. Appl. Bacteriol. 23, 130–135. J. Appl. Bacteriol. 23, 130–135.

Dzhobulaeva A.K., Sadanov A.K., Ajtkel’dieva S.A., Bajkara B.T., Dzhakibaeva G.T., Kebekbaeva K.M. Molekulyarno- geneticheskaya identifikaciya dvuh shtammov molochnokislyh bakterij na osnove analiza nukleotidnyh posledovatel’nostej 16S rRNA GENA [Molecular genetic identification of two strains of lactic bacteria based on the analysis of nucleotide sequences of the 16S rRNA gene] Mezhdunarodnyj zhurnal prikladnyh i fundamental’nyh issledovanij. No 8-1 (2014). P. 63-67- (In Russian)

Fahathabad, E. H. And Eslamifer, M., Isolation and application of one strain of Lactobacillus paraplantarum from tea leaves (Camellia sinensis). Amer. J. Food Technol., 2011; 6(5): 429-434.

Kumar, S., K. Tamura, and M. Nei. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brieffings in bioinformatics.Vol. 5 No 2. 150-163. June, 2004.

Linares D.M., Gómez C., Renes E., Fresno-Baro J.M., Tornadijo M.E., Ross R.P., Stanton C. Lactic Acid Bacteria and Bifidobacteria with Potential to Design Natural Biofunctional Health-Promoting Dairy Foods. Front. Microbiol. 2017;8:846. doi: 10.3389/fmicb.2017.00846.

Ludwig W., Schleifer K.H, Whitman W.B. Revised road map to the phylum Firmicutes // Bergey’s Manual of Systematic Bacteriology. The Firmicutes. New York, Springer-Verlag, USA, 2009. Vol. 3. Р. 1–17.

Maldonado A., Ruiz-Barba J.L., Jimenez-Diaz R. Production of plantaricin NC8 by Lactobacillus plantarum NC8 is induced in the presence of different types of Gram- positive bacterin//Arch. Microbiol.- 2003.- Vol.1.- P.29-35.

Marco M.L., Heeney D., Binda S., Cifelli C.J., Cotter P.D., Foligné B., Gänzle M., Kort R., Pasin G., Pihlanto A., et al. Health benefits of fermented foods:Microbiota and beyond. Curr. Opin. Biotechnol. 2017;44:94–102. doi: 10.1016/j.copbio.2016.11.010.

Mathur H, Beresford TP, Cotter PD. Health Benefits of Lactic Acid Bacteria (LAB) Fermentates. Nutrients. 2020 Jun 4;12(6):1679. doi: 10.3390/nu12061679.

Papamanoli E., Tzanetakis N., Litopoulou-Tzanetaki E., Kotzekidou P. Characterization of lactic acid bacteria isolated from a Greek dry-fermented sausage in respect of their technological and probiotic properties. Meat Sci. 2003;65:859–867. doi: 10.1016/ S0309-1740(02)00292-9.

Parvez S., Malik K., Kang S.A., Kim H.-Y. Probiotics and their fermented food products are beneficial for health. J. Appl. Microbiol. 2006;100:1171–1185. doi: 10.1111/j.1365-2672.2006.02963.x.

Patil, M. M., Pal, A., Anand, T. and Ramanna, K.V., Isolation and characterisation of lactic acid bacteria from curd and cucumber. Indian J. Biotechnol., 2010; 19: 166-172.

Preter V., Raemen H., Cloetens L., Houben E., Rutgeerts, Verbeke K. Effect of dietary intervention with different pre- and probiotics on intestinal bacterial enzyme activities// Eur. J. Clin.Nutr. 2007. – Vol. 10. – P.1038-1046.

Quinto E.J., Jiménez P., Caro I. et al. Probiotic Lactic Acid Bacteria: A Review // Food and Nutrition Sciences. 2014. Vol. Р. 1765–1775.

Reid G. Probiotic Lactobacilli for urogenital health in women// J Clin Gastroenterol. -2008.- Vol.42., Suppl 3, Pt 2. P. 234-236.

Salmerón I., Thomas K., Pandiella S.S. Effect of potentially probiotic lactic acid bacteria on the physicochemical composi- tion and acceptance of fermented cereal beverages. J. Funct. Foods. 2015;15:106–115. doi: 10.1016/j.jff.2015.03.012.

Shenderov B.A. Funkcional’noe pitanie i ego rol’ v profilaktike metabolicheskogo sindroma [Functional nutrition and its role in the prevention of metabolic syndrome]. M.: DeLi print (2008). 319 p. – (In Russian)

Vegas E.Z.S., Nieves B., Araque M., Velasco E., Ruiz J., Vila J. Outbreak of infection with Acinetobacter strain RUH 1139 in an intensive care unit // Infection Control and Hospital Epidemiology. – 2006. – Vol. 27. – P. 397-404.

Yu J., Wang H.M., Zha M.S., Qing Y.T., Bai N.,. Ren Y, Xi X.X., Liu W.J., Menghe B.L.G., Zhang H.P.. Molecular iden- tification and quantification of lactic acid bacteria in traditional fermented dairy foods of Russia. Journal of Dairy Science. Volume 98, Issue 8, 2015. Pages 5143-5154. ISSN 0022-0302, https://doi.org/10.3168/jds.2015-9460.

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Published

2023-03-20

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Section

МOLECULAR BIOLOGY AND GENETICS

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